diff --git a/doc/reference/Doxyfile.in b/doc/reference/Doxyfile.in
index 8ab6642..d6e6ec1 100644
--- a/doc/reference/Doxyfile.in
+++ b/doc/reference/Doxyfile.in
@@ -153,8 +153,8 @@ INPUT                  = "@CMAKE_SOURCE_DIR@/doc/reference/embb.dox" \
                          "@CMAKE_SOURCE_DIR@/base_cpp/include" \
                          "@CMAKE_SOURCE_DIR@/mtapi_c/include" \
                          "@CMAKE_SOURCE_DIR@/base_c/include" \
-                         "@CMAKE_SOURCE_DIR@/mtapi_opencl_c/include" \
-                         "@CMAKE_SOURCE_DIR@/mtapi_network_c/include"
+                         "@CMAKE_SOURCE_DIR@/mtapi_plugins_c/mtapi_opencl_c/include" \
+                         "@CMAKE_SOURCE_DIR@/mtapi_plugins_c/mtapi_network_c/include"
 
 INPUT_ENCODING         = UTF-8
 FILE_PATTERNS          = *.h \